HsaEX6089778 @ hg38
Exon Skipping
Gene
ENSG00000187122 | SLIT1
Description
slit guidance ligand 1 [Source:HGNC Symbol;Acc:HGNC:11085]
Coordinates
chr10:97034471-97040120:-
Coord C1 exon
chr10:97039988-97040120
Coord A exon
chr10:97037698-97037766
Coord C2 exon
chr10:97034471-97034542
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCGCTGTGTTCTCTCTGCAGCTA
3' ss Score
11.61
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
Exon sequences
Seq C1 exon
GCCAGGAGGAGGGGGGCTGCCTGCCCCGCCCACAGTGCCCACAGGAGTGCGCCTGCCTGGACACCGTGGTCCGATGCAGCAACAAGCACCTGCGGGCCCTGCCCAAGGGCATTCCCAAGAATGTCACAGAACT
Seq A exon
CTATTTGGACGGGAACCAGTTCACGCTGGTTCCGGGACAGCTGTCTACCTTCAAGTACCTGCAGCTCGT
Seq C2 exon
GGACCTGAGCAACAACAAGATCAGTTCCTTAAGCAATTCCTCCTTCACCAACATGAGCCAGCTGACCACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187122-'33-45,'33-44,34-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=62.2)
A:
PF138551=LRR_8=PU(8.2=20.8)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGTGCCCACAGGAGTG
R:
CAGCTGGCTCATGTTGGTGAA
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains