RnoEX0083442 @ rn6
Exon Skipping
Gene
ENSRNOG00000026065 | Slit1
Description
slit guidance ligand 1 [Source:RGD Symbol;Acc:69307]
Coordinates
chr1:260872417-260875882:-
Coord C1 exon
chr1:260875750-260875882
Coord A exon
chr1:260874714-260874782
Coord C2 exon
chr1:260872417-260872488
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTCATGTGTTCTCTTCTCAGCTA
3' ss Score
8.67
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GCCAGGAGGAGGTGGGCTGCCTGCCCCGCCCACAGTGCCCCCAAGAGTGCGCCTGCCTGGACACCGTGGTCCGGTGTAGCAACAAGCACCTCCAGGCTCTGCCCAAGGGCATCCCCAAGAATGTCACAGAACT
Seq A exon
CTACTTAGATGGGAACCAGTTCACACTGGTTCCGGGACAGCTGTCTACCTTCAAGTATCTGCAGCTTGT
Seq C2 exon
CGACCTGAGCAACAACAAGATCAGCTCCTTAAGCAACTCTTCCTTCACCAACATGAGTCAGCTGACCACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026065-'31-23,'31-22,32-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=62.2)
A:
PF138551=LRR_8=PU(8.2=20.8)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGTGCCCCCAAGAGTG
R:
GGTCAGCTGACTCATGTTGGT
Band lengths:
170-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]