DreEX6060748 @ danRer10
Exon Skipping
Gene
ENSDARG00000039563 | loxl3b
Description
lysyl oxidase-like 3b [Source:ZFIN;Acc:ZDB-GENE-030131-8210]
Coordinates
chr13:15109660-15158630:+
Coord C1 exon
chr13:15109660-15109877
Coord A exon
chr13:15146839-15147046
Coord C2 exon
chr13:15158450-15158630
Length
208 bp
Sequences
Splice sites
3' ss Seq
GTCTCTTTCACTTTTTTCAGGCT
3' ss Score
10.13
5' ss Seq
CCGGTAAAT
5' ss Score
6.89
Exon sequences
Seq C1 exon
GTGCAGGTGGACGAGAACAGGGTGGAGGAGGTGCGTTTGCGGCCCGTCTTTACTACGGCTACTAAGCGGATGCCGGTCACCGAAGGAGTAGTGGAGGTTAAGAATAAGGACGGATGGGCTCAGATCTGTGATATTGGCTGGACACCCAAAAATACACATGTGGTTTGTGGCATGATGGGATTCCCCCATGAGAAGAAGGTCAATAAGAACTTCTACAA
Seq A exon
GCTGTATGCTGAGCGGCAGAAGAACTTTTTTCTGGTTCATTCAGTGGCTTGTTTAGGCACAGAAGTGCACTTGGCCGCATGTCCTCTGGAGTTTAACTATGGCAATGCCACCGAGTCATGTCCTGGAGGAATGCCTGCTGTGGTCAGCTGTGTGCCTGGACCACTGTACACACAGAGCCCTACTATGAAGAAAAAACTCAAAATGCCG
Seq C2 exon
CCTACAACACGACTGAAGGGGGGAGCAAAATATGGTGAGGGTCGTGTTGAGGTGTTGAAGGGCAGCGAATGGGGGACGGTTTGTGATGATCGCTGGAACCTGGTCTCTGCCAGTGTGGTATGCAGAGAAATGGGTTTTGGATCTGCCAAAGAAGCACTCACTGGGGCCAGCATGGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039563-'6-6,'6-5,10-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.111 C2=0.053
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(49.5=69.9)
A:
PF0053013=SRCR=PD(49.5=72.9)
C2:
PF0053013=SRCR=PU(56.1=90.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCGGCCCGTCTTTACTAC
R:
GCATACCACACTGGCAGAGAC
Band lengths:
306-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]