DreEX6062539 @ danRer10
Exon Skipping
Gene
ENSDARG00000007219 | actn1
Description
actinin, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081113-4]
Coordinates
chr13:36223793-36225887:-
Coord C1 exon
chr13:36225800-36225887
Coord A exon
chr13:36225578-36225656
Coord C2 exon
chr13:36223793-36223874
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTCTCTCTCTGTTAGCTG
3' ss Score
9.16
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGACCTCAGCGAAAGAAGGCCTGCTGTTGTGGTGCCAGAGGAAAACGGCTCCCTACAAAAATGTCAACATTCAGAATTTCCACATCAG
Seq A exon
CTGGAAGGATGGATTGGGCTTCTGTGCGCTCATTCACAGACATCGGCCAGAGCTCATCGATTACAATAAACTGCGCAAG
Seq C2 exon
GACGACCCCATGACGAATCTGAACACGGCCTTCGATGTTGCTGAGAAGTATCTGGACATCCCGAAGATGCTGGACGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007219-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(24.0=83.3)
A:
PF0030726=CH=FE(25.0=100)
C2:
PF0030726=CH=FE(26.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCAGCGAAAGAAGGCC
R:
CGTCCAGCATCTTCGGGAT
Band lengths:
163-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]