RnoEX0006327 @ rn6
Exon Skipping
Gene
ENSRNOG00000056756 | Actn1
Description
actinin, alpha 1 [Source:RGD Symbol;Acc:70907]
Coordinates
chr6:103402296-103405685:-
Coord C1 exon
chr6:103405598-103405685
Coord A exon
chr6:103405070-103405148
Coord C2 exon
chr6:103402296-103402377
Length
79 bp
Sequences
Splice sites
3' ss Seq
ACCTCTCTCTCCCTGGACAGTTG
3' ss Score
11.46
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AGACATCAGCTAAAGAAGGGTTGCTCCTGTGGTGTCAGAGGAAGACAGCCCCATATAAAAATGTCAACATCCAAAACTTCCACATCAG
Seq A exon
TTGGAAGGATGGTCTTGGTTTCTGTGCCTTGATCCACCGGCACCGGCCCGAGTTGATTGACTATGGAAAGCTTCGAAAG
Seq C2 exon
GATGATCCACTCACAAACCTGAACACAGCCTTTGATGTGGCAGAGAGATACCTGGACATTCCAAAGATGCTGGATGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056756-'17-8,'17-7,18-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(24.0=83.3)
A:
PF0030726=CH=FE(25.0=100)
C2:
PF0030726=CH=FE(26.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAGCTAAAGAAGGGTTGCT
R:
TCCAGCATCTTTGGAATGTCC
Band lengths:
160-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]