GgaEX1006131 @ galGal4
Exon Skipping
Gene
ENSGALG00000009474 | ACTN1
Description
alpha-actinin-1 [Source:RefSeq peptide;Acc:NP_989458]
Coordinates
chr5:27540674-27547114:+
Coord C1 exon
chr5:27540674-27540718
Coord A exon
chr5:27541817-27541895
Coord C2 exon
chr5:27547033-27547114
Length
79 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTGTCTCTCTCACAGTTG
3' ss Score
11.45
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GACAGCTCCCTACAAAAATGTAAACATCCAGAACTTCCATATCAG
Seq A exon
TTGGAAAGATGGCCTTGGTTTCTGCGCTTTAATTCACAGACATCGTCCAGAGCTCATTGATTACGGGAAGCTACGAAAG
Seq C2 exon
GATGATCCTCTCACTAATCTAAACACAGCCTTTGATGTAGCTGAAAAATATCTGGATATCCCCAAGATGCTGGATGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009474_MULTIEX3-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0030726=CH=FE(25.0=100)
C2:
PF0030726=CH=FE(26.0=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTCCCTACAAAAATGTAAACA
R:
GCATCCAGCATCTTGGGGATA
Band lengths:
121-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]