MmuEX6081843 @ mm9
Exon Skipping
Gene
ENSMUSG00000015143 | Actn1
Description
actinin, alpha 1 [Source:MGI Symbol;Acc:MGI:2137706]
Coordinates
chr12:81294623-81298000:-
Coord C1 exon
chr12:81297913-81298000
Coord A exon
chr12:81297382-81297460
Coord C2 exon
chr12:81294623-81294704
Length
79 bp
Sequences
Splice sites
3' ss Seq
CCCACTCTCTCCCTGGACAGTTG
3' ss Score
10.42
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AGACTTCAGCTAAAGAAGGGTTACTCCTGTGGTGTCAGAGGAAGACAGCCCCATATAAAAATGTCAACATCCAAAACTTCCACATCAG
Seq A exon
TTGGAAAGATGGTCTTGGTTTCTGTGCCTTGATCCACCGACACCGGCCCGAGTTGATTGACTATGGAAAGCTTCGAAAG
Seq C2 exon
GATGATCCACTCACAAACCTGAACACGGCCTTTGATGTGGCAGAGAGGTTCCTGGACATCCCTAAGATGCTGGATGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015143-'13-6,'13-5,14-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(24.0=83.3)
A:
PF0030726=CH=FE(25.0=100)
C2:
PF0030726=CH=FE(26.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTAAAGAAGGGTTACTCCTGT
R:
GCATCCAGCATCTTAGGGAT
Band lengths:
159-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: