DreEX6063027 @ danRer10
Exon Skipping
Gene
ENSDARG00000052702 | capn1a
Description
calpain 1, (mu/I) large subunit a [Source:ZFIN;Acc:ZDB-GENE-040426-1263]
Coordinates
chr13:42574200-42577280:-
Coord C1 exon
chr13:42577147-42577280
Coord A exon
chr13:42576685-42576853
Coord C2 exon
chr13:42574200-42574283
Length
169 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTGTTTTGTGGCAGGCT
3' ss Score
7.3
5' ss Seq
GATGTGAGA
5' ss Score
2.75
Exon sequences
Seq C1 exon
TTCTGGCAGTTCGGTGAATGGGTGGACGTTGTGATCGATGATCGGCTCCCGGTCAAAGACGGAGAGCTCATGTTTGTCCATTCAGCAGAGGGAAATGAGTTCTGGAGTGCCTTGGTGGAAAAAGCCTATGCTAA
Seq A exon
GCTAAATGGCTCTTATGAAGCTCTTTCTGGAGGCTCTACCACTGAGGGTTTTGAGGATTTTACTGGAGGCGTTTCAGAAATGTACGAGCTCCGGAAAGCTCCAAGAGACTTGTACCGAATCATCAGCAAAGCCCTGGACAGAGGCTCCCTGCTGGGCTGCTCTATTGAT
Seq C2 exon
ATCACCAGTGCCTTTGACATGGAGTCTGTGACATTTAAGAAGCTGGTAAAGGGTCACGCTTACTCCGTGACTGCTCTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052702-'5-9,'5-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(14.7=100)
A:
PF0064816=Peptidase_C2=FE(18.7=100)
C2:
PF0064816=Peptidase_C2=FE(9.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGCAGTTCGGTGAATGG
R:
CTGTTTGAGAGCAGTCACGGA
Band lengths:
218-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]