DreEX6064406 @ danRer10
Exon Skipping
Gene
ENSDARG00000036571 | sema3e
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [Source:ZFIN;Acc:ZDB-GENE-030131-7864]
Coordinates
chr18:9576154-9584404:+
Coord C1 exon
chr18:9576154-9576250
Coord A exon
chr18:9577236-9577352
Coord C2 exon
chr18:9584262-9584404
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTATTTGATTGACAGGTG
3' ss Score
8.81
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
CAGGAGCGAGAGTTCAGGTTGGAGTCTGACCACATAGAGAGTGGCAGAGGAAGAGTCCCATTTCATCCCAACAGCCCTTTAGCATCAACCGTCTACC
Seq A exon
GTGGAGAGCTGTTTGTGGGCCTGTACACTGATTATTGGGAGAATGATGCCGCTCTATATCGTTTAGGCAATCACAGCTTCATCAGGACTGAAGTGGGCGACAGACAGCAGCTGAACG
Seq C2 exon
AGCCCAAGTTTGTGGGTTCAGCGGTGATCCCTGACAATGACGACCCTGCTGACGATAAGGTTTACTACTTCTTCACAGAGCGAGTGGCCGATGTTGAGGGAGGAAATAAAGCTGTTTACACCAGAGTGGCCAGAGTCTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036571-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.2=100)
A:
PF0140314=Sema=FE(8.8=100)
C2:
PF0140314=Sema=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGCGAGAGTTCAGGTTG
R:
GACTCTGGCCACTCTGGTGTA
Band lengths:
234-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]