RnoEX0079286 @ rn6
Exon Skipping
Gene
ENSRNOG00000006631 | Sema3e
Description
semaphorin 3E [Source:RGD Symbol;Acc:1310973]
Coordinates
chr4:17354330-17370484:-
Coord C1 exon
chr4:17370391-17370484
Coord A exon
chr4:17355846-17355965
Coord C2 exon
chr4:17354330-17354472
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCTCTGGGTCGCTTCTGTAGGTA
3' ss Score
8.38
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
GACCCCCTGTTTCACCTGGAGTCACACAGATCTGAGAGAGGAAGGGGCAGATGTCCTTTTGACCCCAACTCCTCCTTTGTGTCCACACTAGTTG
Seq A exon
GTAATGAACTGTTTGCTGGGCTCTACAGTGACTACTGGGGCCGAGACTCAGCGATCTTCCGCAGCCTGGGGAAGCTCGGCCATATCCGCACCGAGCATGACGATGAGCGGCTGCTGAAAG
Seq C2 exon
AACCAAAATTTGTAGGTTCATATATGATTCCTGATAACGAAGACCCAGAGGACAACAAAATGTACTTCTTCTTCACTGAGAAGGCATTGGAGGCAGAGAACAATGCCCACACGATCTACACCCGAGTGGGGCGGCTGTGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006631-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.0=100)
A:
PF0140314=Sema=FE(9.0=100)
C2:
PF0140314=Sema=FE(10.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTTTCACCTGGAGTCAC
R:
CACTCGGGTGTAGATCGTGTG
Band lengths:
218-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]