GgaEX6000390 @ galGal3
Exon Skipping
Gene
ENSGALG00000008509 | SEMA3E
Description
NA
Coordinates
chr1:10239256-10264018:+
Coord C1 exon
chr1:10239256-10239349
Coord A exon
chr1:10252140-10252259
Coord C2 exon
chr1:10263876-10264018
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTTTTATATGTGGTCTACAGGTG
3' ss Score
8.22
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GATCATCTGTTTCAACTGGAATCGCACAAATTTGAGAGAGGACGAGGCAGGTGCCCTTTTGACCCTACTTCTTCCTTCACTTCCATCTTAATTG
Seq A exon
GTGGTGAACTTTTTACTGGTCTCTACAGTGACTACTGGGGAAGAGATGCTGCTGTCTTTCGCACCATGAATCGTATGGCACATCTCCGAACTGAACCTGATAGTGAGCGCCTGCTGAAAG
Seq C2 exon
AACCGAAGTTTGTTGGTTCATACATGATTCCTGACAATGAAGACCATGACGATAACAAAGTGTATTTCTTCTTTACTGAAAAAGCATTAGAGGCTGAGACAAGCACTCATGCCATTTACACCAGAGTGGGACGCGTGTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008509-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.0=100)
A:
PF0140314=Sema=FE(9.0=100)
C2:
PF0140314=Sema=FE(10.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTGTTTCAACTGGAATCGCA
R:
CACACACACGCGTCCCAC
Band lengths:
235-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]