DreEX6092727 @ danRer10
Exon Skipping
Gene
ENSDARG00000055373 | sema3fb
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb [Source:ZFIN;Acc:ZDB-GENE-050513-2]
Coordinates
chr11:35218378-35223806:-
Coord C1 exon
chr11:35223713-35223806
Coord A exon
chr11:35219635-35219754
Coord C2 exon
chr11:35218378-35218517
Length
120 bp
Sequences
Splice sites
3' ss Seq
ACTCTTTCTGTGTTTCTCAGATG
3' ss Score
10.8
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
GAATACGTGTTCCATTTGGAGCCCGGCAAGGAAGATTCTGGGAAGGGAAAGTGCCCGTATGATCCAAAACTGAACAGCGTCTCTGCTTTGATTA
Seq A exon
ATGGAGAACTGTATGCAGGGGTGTATATTGACTTCATGGGAACAGACTCTGCTATTTTCCGCACTTTGGGGAAAAACGCAGTCATGCGTACCGACCAATACAACTCAAGATGGCTGAATG
Seq C2 exon
ACCCATCATTTGTCCATGTGCACCTCATTCCTGACAGCGGTGAGAAAAACGATGACAAACTCTACTTTTTCTTTCGTGAAAAGTCTTCTGAAATGGGCCAGAGCCCGAAATCACAATCCCGCATCGGCCGCATCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055373-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(6.6=100)
A:
PF0140314=Sema=FE(8.5=100)
C2:
PF0140314=Sema=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGTGTTCCATTTGGAGCCC
R:
CCGATGCGGGATTGTGATTTC
Band lengths:
218-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]