RnoEX6037496 @ rn6
Exon Skipping
Gene
ENSRNOG00000017704 | Sema3f
Description
semaphorin 3F [Source:RGD Symbol;Acc:1308514]
Coordinates
chr8:116446731-116448584:-
Coord C1 exon
chr8:116448491-116448584
Coord A exon
chr8:116447069-116447188
Coord C2 exon
chr8:116446731-116446870
Length
120 bp
Sequences
Splice sites
3' ss Seq
ACCCACCAATGCTCCTACAGATG
3' ss Score
8.31
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GATTACATCTTCTACCTGGAGCCTGAGAAACTTGAGTCAGGGAAAGGCAAATGCCCATACGACCCCAAGCTGGACACGGCCTCAGCCCTCATCA
Seq A exon
ATGAGGAGCTCTACGCAGGAGTGTACATCGATTTTATGGGCACTGATGCAGCCATTTTCCGTACGCTTGGAAAGCAGACAGCCATGCGCACAGATCAGTACAACTCCCGGTGGCTCAATG
Seq C2 exon
ATCCTTCATTCATACATGCTGAGCTCATCCCTGACAGCGCTGAGCGCAACGACGATAAACTCTACTTCTTCTTCCGAGAGCGCTCTGCAGAGGCTCCGCAGAACCCTGCGGTGTACGCCCGCATCGGGCGCATCTGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017704-'15-12,'15-11,17-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(6.6=100)
A:
PF0140314=Sema=FE(8.5=100)
C2:
PF0140314=Sema=FE(9.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTACATCTTCTACCTGGAGCCTG
R:
GAGGCAGATGCGCCCGAT
Band lengths:
234-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]