DreEX0065056 @ danRer10
Exon Skipping
Gene
ENSDARG00000011163 | sema3fa
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa [Source:ZFIN;Acc:ZDB-GENE-050513-1]
Coordinates
chr6:42892975-42895988:+
Coord C1 exon
chr6:42892975-42893068
Coord A exon
chr6:42893227-42893346
Coord C2 exon
chr6:42895849-42895988
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGCTCACTCTGTTTTGGCAGATG
3' ss Score
8.46
5' ss Seq
ACGGTATGC
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAATACATTTTCCGACTGGAGCCTGGTAAAGTAGATTCTGGGAAAGGAAAATGCCCCTACGACCCCAAACTCAACAGCGTCTCAGCTTTGATAA
Seq A exon
ATGGCCAGCTTTATGCCGGCGTCTACATCGATTTTATGGGAACAGACTCTGCCATCTTTCGCACGTTGGGCAAACACACGGCAATGAGGACCGACCAGTATAACTCCCGCTGGCTCCACG
Seq C2 exon
ATCCAACATTTGTCCATGCTCAGCTCATCCCTGATAGTGCAGAAAAGAATGACGACAAGCTGTATTTCTTCTTCCGTGAGAAGGCCTCTGAGATGGGTCAGACTCCCATGGCTCAATCTAGGATTGGCAGAATTTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011163-'9-13,'9-11,10-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(6.6=100)
A:
PF0140314=Sema=FE(8.5=100)
C2:
PF0140314=Sema=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGACTGGAGCCTGGTAAAG
R:
GCAAATTCTGCCAATCCTAGATTGA
Band lengths:
221-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]