BtaEX6095219 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018307 | SEMA3F
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F [Source:HGNC Symbol;Acc:HGNC:10728]
Coordinates
chr22:50737983-50739900:-
Coord C1 exon
chr22:50739807-50739900
Coord A exon
chr22:50738345-50738464
Coord C2 exon
chr22:50737983-50738122
Length
120 bp
Sequences
Splice sites
3' ss Seq
ACTCACTGGCCCACCTGCAGATG
3' ss Score
7.65
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GATTACGTCTTCTACCTGGAGCCTGAGAAGCTCGAGTCAGGGAAGGGCAAGTGTCCCTACGACCCCAAGCTGGACACAGCCTCAGCCCTCATCA
Seq A exon
ATGAGGAGCTCTATGCAGGCGTGTACATCGACTTCATGGGCACGGACGCAGCCATCTTCCGCACCCTTGGCAAGCAGACGGCCATGCGCACGGATCAGTACAACTCTCGGTGGCTCAATG
Seq C2 exon
ACCCTTCTTTCATCCACGCCGAGCTCATCCCTGACAGTGCCGAGCGCAACGACGACAAGCTCTACTTCTTCTTCCGTGAGCGGTCCATAGAGGCGCCGCAGAGCCCTGCCGTGTACGCCCGCATTGGGCGGATCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018307-'8-11,'8-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(6.6=100)
A:
PF0140314=Sema=FE(8.5=100)
C2:
PF0140314=Sema=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTACGTCTTCTACCTGGAGCC
R:
CAGGCAGATCCGCCCAATG
Band lengths:
234-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]