GgaEX6009860 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr12:2484690-2485274:+
Coord C1 exon
chr12:2484690-2484849
Coord A exon
chr12:2484923-2485051
Coord C2 exon
chr12:2485129-2485274
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATGCCCGCACTGCCCTGCAGATG
3' ss Score
7.86
5' ss Seq
ACGGTATGT
5' ss Score
9.94
Exon sequences
Seq C1 exon
CAGCACCTGGTCCCAGCACAGCCCTGCTGCAGACTGATCCCCCCTCATGCCCTGCAGGGTCCTGGGGTCCCCGTGATACGGCTGCTGAGCCACTCCCTTCAGTCGGGGCGAGGCCGGTGCCCGTACAGCCCCCGGCAGCCCTTTGCTGCACTGCTGGTCG
Seq A exon
ATGGGCAGCTGTACTCGGGTACCTCCAGTGATTTCATGGGCAGCAGTGCCGCCTTCTTCCGCACCGAGGTCGGCGGGGCTGAGCGGGGCTACATCCGCACGGAGCAGCACCAGGACCACTGGCTGCACG
Seq C2 exon
AGCCCACGTTCGTCGGTGCCTTTGCCATCCCCGACACCCACAACCCACACGACGACAAGGTCTACGTCTTCTTCCGTGAGACGGCCCTGGAGGGCGGGCAGTGGGAGCGGCGACACATCCACGCCAGGGTGGCCCGGGTCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.020
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.1=100)
A:
PF0140314=Sema=FE(9.8=100)
C2:
PF0140314=Sema=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCAGACTGATCCCCC
R:
GTGGATGTGTCGCCGCTC
Band lengths:
258-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]