DreEX0070729 @ danRer10
Exon Skipping
Gene
ENSDARG00000040920 | si:dkey-49n23.1
Description
si:dkey-49n23.1 [Source:ZFIN;Acc:ZDB-GENE-050208-762]
Coordinates
chr22:30879463-30884254:-
Coord C1 exon
chr22:30884161-30884254
Coord A exon
chr22:30881054-30881182
Coord C2 exon
chr22:30879463-30879605
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGTTGATATACTCATTTTAGATG
3' ss Score
6.85
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
AAACCAACCTTCCAGCTTCTCAGTCATGTTGGTGAATCCGGTAGAGGAAAATGTCCCTTTAGTCCACAGGAACCCTTTACCGCCCGTCTGACAG
Seq A exon
ATGGAGAGCTGTACGCTGGGACGGCCGTAGACTTCATGGGAACAAACGCTGCCATTTTTCGCACATCTGTGCATAGCAACAATCAACACTACATCCGCACTGAAGCGTACCAGGACCACTGGCTAAATG
Seq C2 exon
AGCCGGAGTTTGTGGGATCATATTCCATCCCTGACACACACAGCTTAGACGATGACAAAGTATACTTCTTCTTTAAAGAGACCGCCGTAGAGTCGAACCAGCTCGACAAGCGTATCTACAGCCGAGTGGCTCGTGTCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040920-'8-11,'8-10,9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.0=100)
A:
PF0140314=Sema=FE(9.6=100)
C2:
PF0140314=Sema=FE(10.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCTTCCAGCTTCTCAGT
R:
CTTGCAGACACGAGCCACTC
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]