Special

BtaEX6026796 @ bosTau6

Exon Skipping

Gene
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [Source:HGNC Symbol;Acc:HGNC:10727]
Coordinates
chr4:37356464-37368850:+
Coord C1 exon
chr4:37356464-37356557
Coord A exon
chr4:37367524-37367643
Coord C2 exon
chr4:37368708-37368850
Length
120 bp
Sequences
Splice sites
3' ss Seq
TAACTGATGTTTTCATGCAGGTA
3' ss Score
8.84
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GCTCCCCTTTTTCACCTGGAATCGCACAGATCTGAGAGAGGAAGGGGCAGATGTCCCTTTGATCCCAGCTCCTCCTTCATCTCTACTTTAATAG
Seq A exon
GTAGTGAATTGTTTGCCGGACTCTACAGTGACTATTGGGGCAGAGACGCTGCCATCTTCAGGAGCCTGGGACGACTGGCTCAGATCCGCACTGAGCATGATGATGAGCGCCTGTTGAAAG
Seq C2 exon
AGCCAAAATTTGTAGGTTCTTATATGATCCCTGACAATGAAGACCGAGATGACAACAAAGTGTATTTCTTTTTCACGGAGAAGGCCCTGGAGGCCGAAAACAGCGCCCATGCAATTTACACCAGAGTGGGGCGACTCTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014920-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0140314=Sema=FE(7.0=100)
A:
PF0140314=Sema=FE(9.0=100)
C2:
PF0140314=Sema=FE(10.6=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCCTTTTTCACCTGGAA
R:
ACAGAGTCGCCCCACTCTG
Band lengths:
234-354
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]