GgaEX6009860 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNM9]
Coordinates
chr12:2654385-2654912:+
Coord C1 exon
chr12:2654385-2654487
Coord A exon
chr12:2654561-2654689
Coord C2 exon
chr12:2654767-2654912
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATGCCCGCACTGCCCTGCAGATG
3' ss Score
7.86
5' ss Seq
ACGGTATGT
5' ss Score
9.94
Exon sequences
Seq C1 exon
GGTCCTGGGGTCCCCGTGATACGGCTGCTGAGCCACTCCCTTCAGTCGGGGCGAGGCCGGTGCCCGTACAGCCCCCGGCAGCCCTTTGCTGCACTGCTGGTCG
Seq A exon
ATGGGCAGCTGTACTCGGGTACCTCCAGTGATTTCATGGGCAGCAGTGCCGCCTTCTTCCGCACCGAGGTCGGCGGGGCTGAGCGGGGCTACATCCGCACGGAGCAGCACCAGGACCACTGGCTGCACG
Seq C2 exon
AGCCCACGTTCGTCGGTGCCTTTGCCATCCCCGACACCCACAACCCACACGACGACAAGGTCTACGTCTTCTTCCGTGAGACGGCCCTGGAGGGCGGGCAGTGGGAGCGGCGACACATCCACGCCAGGGTGGCCCGGGTCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203-'5-8,'5-6,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.020
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.6=100)
A:
PF0140314=Sema=FE(9.6=100)
C2:
PF0140314=Sema=FE(10.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGATACGGCTGCTGAGC
R:
ACCCTGGCGTGGATGTGT
Band lengths:
219-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]