BtaEX6094868 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046924 | SEMA3G
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr22:49002412-49003111:+
Coord C1 exon
chr22:49002412-49002502
Coord A exon
chr22:49002628-49002744
Coord C2 exon
chr22:49002966-49003111
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGCCCCCACCCCAACCCTAGGAG
3' ss Score
7.98
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
CATGTGCTCCATCTGGAGCCCCGAAGCATGGAAAGTGGGAGGGGGAGATGCCCACACGAGCCCAGTCGTCCCTTCGCCAGCACCTTTGTAG
Seq A exon
GAGGGGAGCTGTACACAGGCCTCAATGCCGACTTCCTGGGGCATGAGGCCATGATCTTCCGGTCTGGGGGTCCCCGACCAGCCTTGCGTTCTGACTCTGACCAGAACCTCCTGCACG
Seq C2 exon
ACCCCAGGTTTGTGCTGGCCGCCCGGATCCCTGACAATTCTGACCCGGACGACGACAAGGTGTACTTCTTCTTCTCGGAGACAGTCCCCTCGCCTGACGGAGGCCCGGGCCGTGTCACCATCAGCCGAGTGGGCCGCGTCTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046924-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.645 A=0.200 C2=0.082
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(6.7=100)
A:
PF0140314=Sema=FE(8.7=100)
C2:
PF0140314=Sema=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCTGGAGCCCCGAAG
R:
CCACTCGGCTGATGGTGAC
Band lengths:
216-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]