GgaEX6009975 @ galGal4
Exon Skipping
Gene
ENSGALG00000004476 | SEMA3G
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr12:3121526-3122086:-
Coord C1 exon
chr12:3121990-3122086
Coord A exon
chr12:3121772-3121888
Coord C2 exon
chr12:3121526-3121668
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACTCAGGGCATCTCTGTCAGGTG
3' ss Score
3.29
5' ss Seq
ATGGTATTG
5' ss Score
2.77
Exon sequences
Seq C1 exon
ACCCAGCATGCCTTCAGCTTGGACCCTGGTAGCACGGAGAGTGGTCGTGGCAGGTGCCCACATGAGCCTGACCGTGCATTTGCCAGCACCATCATCG
Seq A exon
GTGGGGAGCTCTATGCTGGCCTCACTGCGGACTTCCTCGGCCGTGATCCCGGCATCTTCCGCAGCACCGGGACCCGCGCCGCGCTGCGCACTGAGGTGGACCAGCGCCTGCTCAATG
Seq C2 exon
ACCCCAAATTCGTGGCTGCTTACATGATCCCAGACAACGATGATCGAGACGATGACAAAGCCTATTTCTTCTTCACGGAGAAGGTGGTGGAGGCAGACAGCAAGGAGCACACCATCGTCAGCCGGGTGGCACGGGTCTGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004476-'3-11,'3-8,4-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.515 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.2=100)
A:
PF0140314=Sema=FE(8.7=100)
C2:
PF0140314=Sema=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGCATGCCTTCAGCTT
R:
CTGACGATGGTGTGCTCCTTG
Band lengths:
218-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]