MmuEX6040487 @ mm10
Exon Skipping
Gene
ENSMUSG00000021904 | Sema3g
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:MGI Symbol;Acc:MGI:3041242]
Coordinates
chr14:31221521-31222139:+
Coord C1 exon
chr14:31221521-31221611
Coord A exon
chr14:31221715-31221831
Coord C2 exon
chr14:31221994-31222139
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGACTCTGGTCCCTTCTAGGTG
3' ss Score
11.07
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
CATGTGCTCCGCTTGGATGCTAGCAGCGTCGAGAATGGAAGGGGGCGTTGCCCACATGAGCCCAGCCGACCCTTCGCCAGCACCTTTGTAG
Seq A exon
GTGGGGAGCTATACACAGGTCTCACTGCCGATTTCCTGGGACGTGAGGCCATGATTTTCCGGAGTGGGGGTCCCCGACCAGCCCTGCGTTCTGACTCTGACCAGAGCCTCCTACATG
Seq C2 exon
AACCCCGGTTTGTGATGGCTGCTCGGATCCCAGATAACTCTGACCGGGACGACGACAAGGTGTACTTCTTCTTCTCCGAGACTGTCCCGTCACCAGATGGTGGCCCAGGTCATGTCACCATCAGCCGAGTGGGCCGCGTCTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021904-'8-9,'8-5,13-9=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=0.175 C2=0.061
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(6.7=100)
A:
PF0140314=Sema=FE(8.7=100)
C2:
PF0140314=Sema=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCCGCTTGGATGCTAG
R:
CCACTCGGCTGATGGTGAC
Band lengths:
220-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types