DreEX0065024 @ danRer10
Exon Skipping
Gene
ENSDARG00000007560 | sema3bl
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl [Source:ZFIN;Acc:ZDB-GENE-030131-2956]
Coordinates
chr8:26539015-26542071:+
Coord C1 exon
chr8:26539015-26539105
Coord A exon
chr8:26539835-26539951
Coord C2 exon
chr8:26541923-26542071
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTCTCGCTTTCTCAGGTG
3' ss Score
11.25
5' ss Seq
ATGGTACAT
5' ss Score
4.52
Exon sequences
Seq C1 exon
CATGTGTTTAGCTTGGATCAAACCACAGTGCAGAACGGGAGGGGGAGATGCCCTCATGACCCCAAACTACCCTTCGCAAGCACCTTCACAG
Seq A exon
GTGGAGAGCTGTACACTGGTCTGACTGCTGATTTTTTGGGGAGAGACTCTGTGATTTCAAGAGGTTTCGGGACCCGCTCACCCATGAGAACAGAAACAGATCAGAGAATACTCCATG
Seq C2 exon
AGCCCAGATTTGTTGCGGCGCACCTTATTCCTGACAGTGCAGACAGGGATGATGATAAAATTTATTTCTTCTTCACTGAGAGAGCAACAGAAACCGCAGAGCGAGACGATGATGGAGCCATACACACACGCATCGGGCGATTGTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007560-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.200 C2=0.080
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(6.4=100)
A:
PF0140314=Sema=FE(8.3=100)
C2:
PF0140314=Sema=FE(10.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTAGCTTGGATCAAACCACA
R:
CGCACACAATCGCCCGAT
Band lengths:
237-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]