RnoEX6054745 @ rn6
Exon Skipping
Gene
ENSRNOG00000018952 | Sema3g
Description
semaphorin 3G [Source:RGD Symbol;Acc:1306079]
Coordinates
chr16:7307175-7307806:+
Coord C1 exon
chr16:7307175-7307265
Coord A exon
chr16:7307379-7307495
Coord C2 exon
chr16:7307661-7307806
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGACTCTGGCCCCTTCTAGGTG
3' ss Score
10.23
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
CATGTGCTCCACTTGGATCCTAGCAGCATCGAAAATGGAAGGGGGCGTTGCCCACACGAGCCCAGCCGTCCCTTCGCCAGTACCTTTGTAG
Seq A exon
GTGGGGAGCTGTACACGGGCCTCACTGCTGATTTCCTCGGACGTGAGGCCATGATTTTCCGGAGTGGGGGTCCCCGACCAGCCCTGCGTTCTGACTCTGACCAGAGCCTCCTACATG
Seq C2 exon
ATCCCCGGTTTGTGATGGCTGCTCGGATCCCAGATAACTCCGACCGGGATGATGACAAAGTGTACTTCTTCTTCTCTGAGACTGTCCCTTCACCAGATGGTGGCCCAGGTCATGTCACCGTCAGCCGCGTGGGTCGAGTCTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018952-'7-6,'7-4,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=0.175 C2=0.082
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(6.7=100)
A:
PF0140314=Sema=FE(8.7=100)
C2:
PF0140314=Sema=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCCACTTGGATCCTAGC
R:
CACACAGACTCGACCCACG
Band lengths:
234-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]