GgaEX1056953 @ galGal4
Exon Skipping
Gene
ENSGALG00000013370 | Sema3F
Description
semaphorin-3F precursor [Source:RefSeq peptide;Acc:NP_989589]
Coordinates
chr12:3181615-3183130:+
Coord C1 exon
chr12:3181615-3181708
Coord A exon
chr12:3181974-3182093
Coord C2 exon
chr12:3182991-3183130
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTGATCCCTTCCCTCTGCAGATG
3' ss Score
13.49
5' ss Seq
ACGGTTGGT
5' ss Score
6.35
Exon sequences
Seq C1 exon
GATTATATCTTCTACCTAGAGCCGGACAAGCTGGAGTCAGGCAAAGGGAAGTGTTCTTATGACCCCAAAGTGGACACCGTCTCTGCATTGATAA
Seq A exon
ATGAAGAACTCTATGCTGGGGTCTACATCGACTTCATGGGCACTGATGCAGCCATCTTCCGCACTATGGGCAAGCAGACAGCCATGAGGACAGACCAGTACAATTCACGCTGGCTCAACG
Seq C2 exon
ACCCTGCCTTCGTCCGTGCCCAGCTCATCCCTGACAGCAGCGAGAGGAATGATGACAAACTCTACTTCTTCTTCCGGGAGAAGTCGGCGGATGCCCCGCTCAGCCCCGGGGTCTATTCCCGCATCGGGCGCATCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013370_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.007
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.0=100)
A:
PF0140314=Sema=FE(9.0=100)
C2:
PF0140314=Sema=FE(10.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTATATCTTCTACCTAGAGCCGGA
R:
CAGGCAGATGCGCCCGAT
Band lengths:
234-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]