DreEX6066380 @ danRer10
Exon Skipping
Gene
ENSDARG00000061635 | myo5aa
Description
myosin VAa [Source:ZFIN;Acc:ZDB-GENE-041027-2]
Coordinates
chr18:39008393-39010577:+
Coord C1 exon
chr18:39008393-39008551
Coord A exon
chr18:39008649-39008746
Coord C2 exon
chr18:39010491-39010577
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTTTCTTTCTGCAGTTC
3' ss Score
11.14
5' ss Seq
CACGTATGT
5' ss Score
7.26
Exon sequences
Seq C1 exon
TTTGACCTGCTAGTGGAGCTGTTCCATGATGAGGAGAAAGCCACAAGTCCCACCGGTGCTGCCCCTGGCCCTGGAGGACGCACTCGCCTCAGTGTCAAACCAGACAAGGGCAAATCCAGCCAAGCCAGCAAAGAACACAAGAAGACAGTCGGACTGCAG
Seq A exon
TTCCGGAACTCTCTGCAGCTGCTGATGGAGACACTGAATGCCACTACACCTCATTATGTTCGATGCATTAAACCCAACGATTACAAACATGCCTTCAC
Seq C2 exon
GTTTGACCCCAAGAGGGCAGTGCAGCAACTGCGTGCTTGTGGAGTTTTGGAAACAATCCGCATCTCTGCAGCTGGTTTCCCATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061635-'20-20,'20-19,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.641 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
PF0006316=Myosin_head=FE(4.7=100)
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAGCCACAAGTCCCACC
R:
CAAAACTCCACAAGCACGCAG
Band lengths:
175-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]