HsaEX6074838 @ hg19
Exon Skipping
Gene
ENSG00000197535 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:7602]
Coordinates
chr15:52672019-52676519:-
Coord C1 exon
chr15:52676358-52676519
Coord A exon
chr15:52675288-52675385
Coord C2 exon
chr15:52672019-52672105
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTCTGCCCTTTTTCATGCAGTTC
3' ss Score
8.94
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
TTTAAGATGCTACCAGAACTATTTCAAGATGATGAGAAGGCCATCAGTCCAACTTCAGCCACCTCCTCAGGGCGCACACCCCTCACACGAACTCCTGCAAAGCCCACCAAAGGCAGACCAGGCCAAATGGCCAAAGAGCACAAGAAAACAGTGGGGCATCAG
Seq A exon
TTCAGAAACTCCCTGCACCTGCTTATGGAGACACTCAATGCCACTACCCCTCACTATGTGCGCTGTATCAAGCCTAATGACTTCAAGTTCCCATTCAC
Seq C2 exon
GTTTGATGAGAAGAGGGCAGTGCAGCAGCTGAGAGCATGTGGTGTCCTGGAAACCATCCGAATCAGTGCGGCCGGTTTCCCCTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197535-'26-31,'26-27,27-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.8=100)
A:
PF0006316=Myosin_head=FE(4.7=100)
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCAACTTCAGCCACCTC
R:
GGATGGTTTCCAGGACACCAC
Band lengths:
177-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)