MmuEX6067256 @ mm10
Exon Skipping
Gene
ENSMUSG00000034593 | Myo5a
Description
myosin VA [Source:MGI Symbol;Acc:MGI:105976]
Coordinates
chr9:75160418-75164216:+
Coord C1 exon
chr9:75160418-75160579
Coord A exon
chr9:75161432-75161529
Coord C2 exon
chr9:75164130-75164216
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTTAACCCTTTTCATGCAGTTT
3' ss Score
6.25
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
TTTAAGATGCTACCAGAGCTATTTCAAGATGATGAGAAGGCCATCAGTCCCACCTCTGCCACCTCCTCAGGGCGCACTCCTCTCACTCGAGTTCCTGTAAAGCCCACCAAGGGCCGACCTGGCCAGACTGCCAAAGAGCACAAGAAGACAGTGGGACATCAG
Seq A exon
TTTCGAAACTCCCTTCACCTGCTTATGGAAACCCTTAATGCCACTACTCCTCACTATGTACGCTGTATTAAGCCTAATGATTTCAAGTTTCCATTCAC
Seq C2 exon
ATTTGATGAGAAGAGGGCAGTGCAGCAGCTAAGAGCATGTGGTGTCCTGGAGACCATCCGGATCAGCGCAGCAGGGTTTCCCTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034593-'28-27,'28-24,29-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.8=100)
A:
PF0006316=Myosin_head=FE(4.7=100)
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGAAGGCCATCAGTCCCA
R:
ATGCTCTTAGCTGCTGCACTG
Band lengths:
169-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types