RnoEX0057376 @ rn6
Exon Skipping
Gene
ENSRNOG00000058866 | Myo5a
Description
myosin VA [Source:RGD Symbol;Acc:3143]
Coordinates
chr8:82082916-82086723:+
Coord C1 exon
chr8:82082916-82083077
Coord A exon
chr8:82083981-82084078
Coord C2 exon
chr8:82086637-82086723
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTAAAACCTTTTCATGCAGTTT
3' ss Score
5.3
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
TTTAAGATGCTACCAGAACTATTTCAAGATGACGAGAAGGCCATCAGTCCCACCTCTGCCACTTCCTCAGGACGCACACCTCTCACACGGGTACCTGTAAAGCCCACCAAGGGTCGACCTGGCCAGACTGCCAAAGAGCACAAGAAGACAGTGGGACTTCAG
Seq A exon
TTTCGAAACTCCCTTCACCTGCTTATGGAAACCCTTAACGCCACTACTCCTCACTATGTTCGCTGTATTAAGCCCAATGATTTCAAGTTTCCATTCAC
Seq C2 exon
ATTTGATGAGAAGAGAGCAGTACAGCAGCTAAGAGCATGTGGTGTCCTGGAGACCATCCGGATCAGCGCAGCAGGGTTTCCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058866-'22-27,'22-24,23-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.8=100)
A:
PF0006316=Myosin_head=FE(4.7=100)
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGAGAAGGCCATCAGTCC
R:
ACACCACATGCTCTTAGCTGC
Band lengths:
178-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]