DreEX6066460 @ danRer10
Exon Skipping
Gene
ENSDARG00000003420 | chrna5
Description
cholinergic receptor, nicotinic, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-050417-440]
Coordinates
chr18:40501926-40503713:-
Coord C1 exon
chr18:40503604-40503713
Coord A exon
chr18:40502731-40502908
Coord C2 exon
chr18:40501926-40502258
Length
178 bp
Sequences
Splice sites
3' ss Seq
TCATGGTTGGTTGATTGCAGTGC
3' ss Score
3.89
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GAATGGACAGACTTGAAGCTCAGATGGGATCCGGATCATTACCTGGGCATCACCTCTATCAGGGTGCCTTCAGACTCCATCTGGATTCCTGACATTGTGCTCTATGACAA
Seq A exon
TGCAGATGGTAATTTCGAGGCCACAGTGACAAAAGCAGTGGTGAGATTTGATGGCACAATCTCCTGGACTCCTCCTGCCAACTATAAATCTGCCTGCACCATTGATGTGACCTTCTTCCCCTTTGACCTTCAAAACTGCTCCATGAAGTTCGGTTCTTGGACCTATGATGGCTCCCAG
Seq C2 exon
GTCGACATTCTCCTTGAAGACGTGCATGTGGACAAACGTGACTATTTTGACAATGGCGAATGGGAGATCGTGAAGGCCACTGGTAACCGGGGTTTGAGAAGAGATGGGACTTTTTTCTATCCATCCATCACGTACTCCTTTATAATCCGACGTCTTCCTCTCTTCTACACACTCTTCCTCATCATCCCCTGCATTGGATTGTCTTTCCTGACTGTGCTTGTCTTTTATCTTCCGTCTAATGGAGGGGAAAAAATCTCCCTCTGCACGTCTGTCCTCGTCTCACTTACTGTCTTCCTTCTGGTGATAGAAGAGATCATCCCTTCCTCCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003420-'7-10,'7-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(17.6=100)
A:
PF0293118=Neur_chan_LBD=FE(28.9=100)
C2:
PF0293118=Neur_chan_LBD=PD(25.5=46.8),PF0293211=Neur_chan_memb=PU(40.8=45.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGCCTTCAGACTCCATCT
R:
CCAATGCAGGGGATGATGAGG
Band lengths:
246-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]