RnoEX0021207 @ rn6
Exon Skipping
Gene
ENSRNOG00000013610 | Chrna5
Description
cholinergic receptor nicotinic alpha 5 subunit [Source:RGD Symbol;Acc:2347]
Coordinates
chr8:59584571-59589144:+
Coord C1 exon
chr8:59584571-59584680
Coord A exon
chr8:59586227-59587055
Coord C2 exon
chr8:59588465-59589144
Length
829 bp
Sequences
Splice sites
3' ss Seq
TTGTCGTGTGCTTCTTTTAGTGC
3' ss Score
8.24
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GAATGGATAGATGTGAAATTGAGATGGAATCCTGACGATTATGGTGGGATAAAGATTATACGTGTTCCTTCGGACTCCCTGTGGATCCCAGACATCGTTTTGTTCGATAA
Seq A exon
TGCAGATGGACGTTTTGAAGGGGCCAGCACGAAAACAGTTGTCAGGTACAACGGCACTGTCACGTGGACGCAACCAGCAAACTACAAAAGTTCTTGCACCATCGACGTTACCTTTTTCCCGTTTGATCTCCAAAATTGTTCCATGAAATTCGGCTCGTGGACATACGATGGATCCCAGGTTGATATAATCCTAGAGGACCAAGATGTCGACAGAACAGACTTTTTCGACAATGGAGAGTGGGAAATCATGAGCGCGATGGGGAGCAAGGGGAACCGGACGGACAGCTGCTGCTGGTACCCCTACATCACGTACTCCTTTGTGATTAAGCGGCTGCCTCTCTTCTATACCTTGTTTCTTATTATCCCCTGCATTGGGCTCTCATTTCTGACTGTGGTTGTCTTCTATCTCCCTTCAAACGAGGGTGAAAAGATTAGCCTCTGCACCTCAGTGCTCGTCTCTCTGACTGTCTTCCTTTTGGTAATCGAAGAGATCATACCGTCATCTTCCAAAGTCATACCCCTGATTGGGGAGTACTTGGTGTTCACCATGATTTTCGTGACCCTATCCATTATGGTGACTGTCTTTGCCATCAACATCCACCACCGCTCTTCCTCCACACACAACGCTATGGCGCCCTGGGTTCGTAAGATATTTCTCCACAAGCTTCCCAAGCTGCTCTGCATGAGAAGTCATGCGGATAGGTACTTCACTCAGAGAGAAGAAGCCGAGAGTGGGGCTGGACCTAAATCTCGGAACACTTTGGAAGCCGCACTCGATTGCATTCGCTACATCACGAGGCACGTCGTGAAAGAGAACGACGTCCGCGAG
Seq C2 exon
GTTGTTGAAGATTGGAAATTCATAGCCCAAGTCCTTGATCGGATGTTTTTGTGGACGTTTCTTCTGGTGTCAATCATTGGGACTTTAGGGCTTTTTGTTCCTGTTATTTATAAATGGGCCAATATAATAGTCCCAGTTCACATTGGAAACACAATTAAGTGAAACCAAGAAATTACCCTGTGGATTTAGTGAGCAGTCATGCAGCTCTTAGGACATGTATGCTGTTATGGAAATGTGAAGGTAGTTACAATTTGACATAGGCTATAACAGATTAGCAATTTCTAACATTGGCTTAATGTTGTCCATTAGAACTGCAGTAATAACCTCAAATAGCAACAACACATTGTCTGCCTGCACTAGTGAAGGCCTAGCATCTGCATCCTGGCAAACCCTACCAATTTGCAACCAATGATGAAGGCCATCCTTGGAGTGCTGGAAAACTCAACTGTATTTGAAGACTATTTAAAACTCCCCCCAAATTTAGTAGGAACATATATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013610-'4-7,'4-4,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(17.6=100)
A:
PF0293118=Neur_chan_LBD=PD(54.9=40.4),PF0293211=Neur_chan_memb=WD(100=48.0),PF0293211=Neur_chan_memb=PU(54.8=14.4)
C2:
PF0293211=Neur_chan_memb=PD(42.5=57.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGTGGATCCCAGACAT
R:
ACTGCAGTTCTAATGGACAACA
Band lengths:
354-1183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]