GgaEX0003915 @ galGal3
Exon Skipping
Gene
ENSGALG00000003021 | F1NIT6_CHICK
Description
NA
Coordinates
chr10:4572039-4575723:-
Coord C1 exon
chr10:4575614-4575723
Coord A exon
chr10:4573809-4574640
Coord C2 exon
chr10:4572039-4572200
Length
832 bp
Sequences
Splice sites
3' ss Seq
TATATCTCTTTTTCTTTCAGTGC
3' ss Score
10.97
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GAGTGGATAGATGTAAAATTAAGATGGAACCCTGAAGATTATGCTGGAATAACATCTATTCGTGTCCCATCAGATTCTATTTGGATTCCAGACATTGTGTTATATGACAA
Seq A exon
TGCAGATGGACGTTTTGAGGGGACGTCTACTAAAACTGTGGTAAAATATGATGGCACCATTGCTTGGACTCCACCAGCAAATTATAAAAGTTCTTGTACTATTGACGTAACCTTCTTTCCCTTTGACCTCCAAAACTGCTCTATGAAATTTGGTTCCTGGACTTACGATGGCTCCCAGGTTGATATAATTTTAGAAGATTATGATGTTGACAAAAGAGACTTTTTTGATAATGGAGAATGGGAAATAGTGACTGCAACAGGGAGCAAAGGAAATAGAACTGATGGATGCTGCTGGTATCCCTTTGTTACATATTCATTTATAATTAGACGTTTACCACTTTTTTACACGTTGTTTCTCATCATTCCTTGTATTGGACTTTCTTTTCTAACTGTCCTCGTCTTCTATCTTCCTTCAAATGAAGGTGAAAAAATTTCCCTTTGCACTTCAGTCCTGGTATCTCTGACTGTTTTTCTTCTTGTCATTGAAGAGATTATTCCATCGTCTTCTAAAGTTATCCCACTTATAGGAGAATACTTGGTGTTTACTATGATATTTGTGACATTGTCCATTGTGATAACTGTCTTTGCTATCAATATTCATCACCGTTCTTCATCTACACACAATGCCATGGCACCTTGGGTTCGCAAGATATTTCTTCACAAACTTCCCAAGCTGCTGTGCATGAGAAGTCATGTAGATAGATACTTTGCTCAGAAGGAGGAAAAAGGAAACATGAGTGGATCAGAATCGTCTAGAAACACCTTGGAAGCAGCTCTAGACTCTATCCGATATATCACAAGGCATGTTATGAAGGAAAATGAAGTTCGTGAG
Seq C2 exon
GTTGTTGAAGACTGGAAATTTATTGCTCAGGTGCTTGATCGAATGTTCTTATGGGCCTTTCTTCTGGTTTCAATAATTGGATCACTTGTGTTATTTATTCCTGTTATTCATAAATGGGCAAGTATAATAGTACCTGTGCATATAGGCAGTACAAATACGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003021-'5-10,'5-8,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(17.6=100)
A:
PF0293118=Neur_chan_LBD=PD(54.9=40.3),PF0293211=Neur_chan_memb=WD(100=48.9),PF0293211=Neur_chan_memb=PU(54.2=14.0)
C2:
PF0293211=Neur_chan_memb=PD(43.1=57.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTAAAATTAAGATGGAACCCTG
R:
ACGTATTTGTACTGCCTATATGCACA
Band lengths:
262-1094
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]