GgaEX0003915 @ galGal4
Exon Skipping
Gene
ENSGALG00000003021 | CHRNA5
Description
neuronal acetylcholine receptor subunit alpha-5 precursor [Source:RefSeq peptide;Acc:NP_989746]
Coordinates
chr10:3130409-3134093:-
Coord C1 exon
chr10:3133984-3134093
Coord A exon
chr10:3132179-3133010
Coord C2 exon
chr10:3130409-3130570
Length
832 bp
Sequences
Splice sites
3' ss Seq
TATATCTCTTTTTCTTTCAGTGC
3' ss Score
10.97
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GAGTGGATAGATGTAAAATTAAGATGGAACCCTGAAGATTATGCTGGAATAACATCTATTCGTGTCCCATCAGATTCTATTTGGATTCCAGACATTGTGTTATATGACAA
Seq A exon
TGCAGATGGACGTTTTGAGGGGACGTCTACTAAAACTGTGGTAAAATATGATGGCACCATTGCTTGGACTCCACCAGCAAATTATAAAAGTTCTTGTACTATTGACGTAACCTTCTTTCCCTTTGACCTCCAAAACTGCTCTATGAAATTTGGTTCCTGGACTTACGATGGCTCCCAGGTTGATATAATTTTAGAAGATTATGATGTTGACAAAAGAGACTTTTTTGATAATGGAGAATGGGAAATAGTGACTGCAACAGGGAGCAAAGGAAATAGAACTGATGGATGCTGCTGGTATCCCTTTGTTACATATTCATTTATAATTAGACGTTTACCACTTTTTTACACGTTGTTTCTCATCATTCCTTGTATTGGACTTTCTTTTCTAACTGTCCTCGTCTTCTATCTTCCTTCAAATGAAGGTGAAAAAATTTCCCTTTGCACTTCAGTCCTGGTATCTCTGACTGTTTTTCTTCTTGTCATTGAAGAGATTATTCCATCGTCTTCTAAAGTTATCCCACTTATAGGAGAATACTTGGTGTTTACTATGATATTTGTGACATTGTCCATTGTGATAACTGTCTTTGCTATCAATATTCATCACCGTTCTTCATCTACACACAATGCCATGGCACCTTGGGTTCGCAAGATATTTCTTCACAAACTTCCCAAGCTGCTGTGCATGAGAAGTCATGTAGATAGATACTTTGCTCAGAAGGAGGAAAAAGGAAACATGAGTGGATCAGAATCGTCTAGAAACACCTTGGAAGCAGCTCTAGACTCTATCCGATATATCACAAGGCATGTTATGAAGGAAAATGAAGTTCGTGAG
Seq C2 exon
GTTGTTGAAGACTGGAAATTTATTGCTCAGGTGCTTGATCGAATGTTCTTATGGGCCTTTCTTCTGGTTTCAATAATTGGATCACTTGTGTTATTTATTCCTGTTATTCATAAATGGGCAAGTATAATAGTACCTGTGCATATAGGCAGTACAAATACGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003021-'2-8,'2-3,3-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(17.6=100)
A:
PF0293118=Neur_chan_LBD=PD(54.9=40.3),PF0293211=Neur_chan_memb=WD(100=48.9),PF0293211=Neur_chan_memb=PU(54.2=14.0)
C2:
PF0293211=Neur_chan_memb=PD(43.1=57.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTAAAATTAAGATGGAACCCTG
R:
ACGTATTTGTACTGCCTATATGCACA
Band lengths:
262-1094
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]