DreEX6066664 @ danRer10
Exon Skipping
Gene
ENSDARG00000061173 | st14a
Description
suppression of tumorigenicity 14 (colon carcinoma) a [Source:ZFIN;Acc:ZDB-GENE-030131-6496]
Coordinates
chr18:44551375-44558185:+
Coord C1 exon
chr18:44551375-44551407
Coord A exon
chr18:44553819-44554053
Coord C2 exon
chr18:44558055-44558185
Length
235 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTCTGAATGTTTAGCAA
3' ss Score
4.76
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
CTCTGGACAAACGTTTGATCTCAAAAGCCAGAT
Seq A exon
CAAGTACAAGATACAACAAGCACACCAGCCGATTTGTCGAGGATATCATCTTTTCGCCAGGTTTTCCTGACTCCCCATATCCTTCAAACACCTTTGTGCAGTGGCAGCTTCGTGGAGACCCAGACCATGTGCTCAAGTTGACCTTCGACACTTTCAACCTCGAACAAAACTGCTCTAATGACTTTCTGAGAGTGTATGACTCTCTGGTCGCCCTGGACAAATTCATCATGGCAGA
Seq C2 exon
AAAGTGTGGCTACTATTCTCCCAGCGATCCCTTATCCTTCATCTCATCCCGAAATGTTATGCTAGTCACACTGGTGACCAACGAAGAAGGGGCTTATCCTGGTTTCAGAGCCAGAGTCTCTCAAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061173-'11-13,'11-10,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(63.6=88.6)
C2:
PF0043115=CUB=PD(35.5=86.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGACAAACGTTTGATCTCA
R:
CTTGAATTTGAGAGACTCTGGCTCT
Band lengths:
164-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]