RnoEX6035121 @ rn6
Exon Skipping
Gene
ENSRNOG00000005903 | St14
Description
suppression of tumorigenicity 14 [Source:RGD Symbol;Acc:69288]
Coordinates
chr8:32250530-32252970:-
Coord C1 exon
chr8:32252935-32252970
Coord A exon
chr8:32252459-32252699
Coord C2 exon
chr8:32250530-32250669
Length
241 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTGTCTCTCCCACAGACA
3' ss Score
12.4
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CCATTGACCCCAGAATGCTCCAGAGGACTCAGGACA
Seq A exon
ACAGCTGCAGTTTTGCCCTCCATGCCCGTGGCAGGACAGTGACACGTTTCACTACCCCTGGCTTCCCTAACAGTCCCTACCCAGCTCATGCCCGCTGCCAGTGGGTCCTGCGGGGGGACGCGGACTCTGTGCTGAGCCTCACCTTCCGAAGTTTTGATGTCGCGCCCTGTGATGGGCATGACAGTGACCTGGTCACAGTGTATGACAGCCTGAGCCCCATGGAGCCCCATGCTGTGGTGCG
Seq C2 exon
GCTGTGTGGCACCTTCTCGCCCTCCTACAACCTGACTTTCCTCTCCTCCCAGAACGTCTTCCTTGTTACGCTGATAACCAACACTGACCGGCGACATCCTGGCTTTGAGGCCACTTTCTTCCAGCTGCCCAAGATGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005903-'10-6,'10-5,11-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(66.1=96.3)
C2:
PF0043115=CUB=PD(33.1=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGACCCCAGAATGCTCC
R:
CTCATCTTGGGCAGCTGGAAG
Band lengths:
174-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]