MmuEX6064787 @ mm9
Exon Skipping
Gene
ENSMUSG00000031995 | St14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:MGI Symbol;Acc:MGI:1338881]
Coordinates
chr9:30911271-30914109:-
Coord C1 exon
chr9:30914074-30914109
Coord A exon
chr9:30913599-30913839
Coord C2 exon
chr9:30911271-30911410
Length
241 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCATCTCTCCCACAGACA
3' ss Score
11.12
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CCATTGACCCCAGAATGCTGCAGAGGACTCAGGACA
Seq A exon
ACAGCTGCAGTTTTGCCCTGCATGCCCATGGTGCAGCAGTGACACGCTTCACTACCCCTGGCTTCCCCAACAGTCCCTACCCGGCGCATGCCCGCTGCCAGTGGGTCCTGCGGGGGGACGCCGACTCTGTGCTGAGCCTCACCTTCCGAAGCTTTGATGTCGCTCCCTGTGATGAGCATGGCAGTGACCTGGTCACCGTGTATGATAGCCTGAGCCCCATGGAACCCCACGCTGTGGTGCG
Seq C2 exon
GCTGTGTGGCACCTTCTCACCCTCCTACAACCTGACTTTCCTCTCCTCCCAGAACGTCTTCCTTGTCACGCTGATAACCAATACTGACCGGCGACATCCTGGCTTTGAGGCCACTTTCTTCCAGCTGCCCAAGATGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031995-'11-10,'11-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(66.1=96.3)
C2:
PF0043115=CUB=PD(33.1=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACCCCAGAATGCTGCAG
R:
CTCATCTTGGGCAGCTGGAAG
Band lengths:
172-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: