GgaEX6025514 @ galGal3
Exon Skipping
Gene
ENSGALG00000001331 | F1NLW7_CHICK
Description
NA
Coordinates
chr24:1601322-1602302:+
Coord C1 exon
chr24:1601322-1601357
Coord A exon
chr24:1601693-1601930
Coord C2 exon
chr24:1602163-1602302
Length
238 bp
Sequences
Splice sites
3' ss Seq
TTTGCTGTTCTCCTGGGCAGATA
3' ss Score
9.91
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTGCCGACCCCAGCATCGCTCAGACTGCTCGGGACA
Seq A exon
ATAGCTGCCTTTTCGCCCTCCACGCCAAGGAAGGGGAGATCACCAGTTTCAACACACCAGGGTTCCCCCACAGCCCATACCCCAACAATGCACGCTGCTACTGGGCACTGAGGGCAGATGCCAACTCCGTCATCAGCCTGACCTTCAAGACACTGGACTTGGAGCAGTGCACAGACAGCAGTGACTACGTCAAGGTGTATGACTCTCTGAGCCCTGTGGAGCCCCATGCTCTGGTGAG
Seq C2 exon
GCTCTGTGGGAACTATGCCCCTTCATACAACCTGACCTTCCTGTCCTCCCAGAACGTTATGCTTGTCGCGTTGATTACCAACAAGGAGGGGAGATACCCTGGCTTTAAGGCTGAGTTCTTCCAGCTCCCAAAGATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001331-'8-14,'8-12,9-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(65.8=96.2)
C2:
PF0043115=CUB=PD(33.3=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCCCAGCATCGCTCA
R:
CTTTCATCTTTGGGAGCTGGA
Band lengths:
172-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]