DreEX6066939 @ danRer10
Exon Skipping
Gene
ENSDARG00000099137 | LTBP4
Description
latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:HGNC:6717]
Coordinates
chr18:49015962-49018091:-
Coord C1 exon
chr18:49017951-49018091
Coord A exon
chr18:49017726-49017869
Coord C2 exon
chr18:49015962-49015976
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTCTGCAGATA
3' ss Score
11.39
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ACCTCTGGACAGATGTGGACGAGTGTAAGCTGTTTGATCCGGAGGTGTGTAAAGGCGGTACGTGTGTTAACAATATACCCGGATACGCCTGTTACTGTCGCAGCGGATCCTACTATGACACGGAGCTGCTGGAGTGCACCG
Seq A exon
ATAATGATGAGTGTGAGAGTGAGGACACCTGCAGTGGTGGACGGTGTGTTAACACACAGGGAACGTTTTACTGTACTTGTGAGCCCCCTTTAGTGCTGGACGACACACAGCGCAACTGTGTTAATGCAAGCGGACTCACTGAGG
Seq C2 exon
TGTTTCCACTGTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099137-'42-40,'42-39,43-40=AN
Average complexity
A_C2
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=87.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=85.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]