RnoEX0051409 @ rn6
Exon Skipping
Gene
ENSRNOG00000020871 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:RGD Symbol;Acc:1307033]
Coordinates
chr1:84120693-84122143:-
Coord C1 exon
chr1:84122015-84122143
Coord A exon
chr1:84121688-84121834
Coord C2 exon
chr1:84120693-84120845
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCACCTCCATGCTTTCCTAGATA
3' ss Score
8.11
5' ss Seq
TTGGTAACT
5' ss Score
4.27
Exon sequences
Seq C1 exon
ATGTGGATGAATGCCAACTCTTCCAGGACCAGGTGTGCAAGAGCGGAGTGTGTGTGAACACTGCCCCAGGCTACTCTTGCTATTGCAACAACGGCTTCTACTATCATGCGCACAGGCTGGAATGCGTTG
Seq A exon
ATAATGACGAATGTGCCGACGAGGAGCCCGCTTGTGAAGGTGGCCGCTGCGTGAACACGGTGGGCTCTTACCACTGTACCTGCGAGCCCCCACTGGTGCTGGACGGCTCCAGGCGACGCTGCGTCTCCAATGAGAGCCAGAGCCTTG
Seq C2 exon
ATGACAATCTGGGAGTGTGCTGGCAGGAAGTCGGGCCTGATCTCGTCTGCAGTCGCCCACGACTAGACCGGCAGGCCACCTACACAGAGTGCTGCTGTCTCTATGGTGAAGCCTGGGGTATGGACTGTGCTCTCTGTCCTGCCCAGGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020871-'43-38,'43-37,44-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=82.0)
C2:
PF0068312=TB=PU(86.0=71.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCTTCCAGGACCAGGTGT
R:
AGAGAGCACAGTCCATACCCC
Band lengths:
249-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]