MmuEX6009248 @ mm10
Exon Skipping
Gene
ENSMUSG00000040488 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:MGI Symbol;Acc:MGI:1321395]
Coordinates
chr7:27307768-27309414:-
Coord C1 exon
chr7:27309286-27309414
Coord A exon
chr7:27308921-27309067
Coord C2 exon
chr7:27307768-27307920
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTCCTCCCATACTTTCCTAGATA
3' ss Score
8.67
5' ss Seq
TGGGTAACC
5' ss Score
3.95
Exon sequences
Seq C1 exon
ATGTGGACGAATGCCAACTCTTCCAGGACCAGGTGTGCAAGAGCGGAGTGTGTGTGAACACGGCCCCAGGCTACTCTTGCTATTGCAGCAACGGGTTCTACTATCACGCACACAGGCTGGAGTGCGTTG
Seq A exon
ATAATGACGAATGTGCGGACGAGGAGCCTGCTTGTGAAGGTGGCCGCTGCGTCAACACGGTGGGCTCTTACCACTGTACCTGCGAGCCCCCACTGGTGCTGGACGGCTCCCGGCGACGCTGCGTCTCCAACGAGAGCCAGAGCCTGG
Seq C2 exon
ATGACAATCTAGGAGTGTGCTGGCAGGAAGTGGGACCTGATCTCGTCTGCAGTCGCCCACGACTAGACCGGCAGGCCACCTACACCGAGTGCTGCTGTCTCTATGGTGAAGCCTGGGGTATGGACTGCGCTCTCTGTCCTGCCCAGGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040488-'57-61,'57-60,59-61
Average complexity
S
Mappability confidence:
75%=75=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=82.0)
C2:
PF0068312=TB=PU(86.0=71.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGAATGCCAACTCTTCCA
R:
CCCCAGGCTTCACCATAGAGA
Band lengths:
243-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types