DreEX6066991 @ danRer10
Exon Skipping
Gene
ENSDARG00000100766 | ube2q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:ZFIN;Acc:ZDB-GENE-050522-329]
Coordinates
chr18:50605360-50606329:-
Coord C1 exon
chr18:50606281-50606329
Coord A exon
chr18:50606089-50606184
Coord C2 exon
chr18:50605360-50605426
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTTCTCAGGGC
3' ss Score
10.81
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
GTATGTACTGGGAGGAGGAGCTCTGTGTATGGAACTACTCACTAAACAG
Seq A exon
GGCTGGAGCAGTGCCTATTCCATCGAGTCTGTCATAATGCAGATCAACGCCACTTTAGTCAAAGGGAAAGCGAGAGTGCAGTTTGGAGCCAACAAG
Seq C2 exon
AATCAGTACAATCTTGCCAGAGCACAGCAGTCGTATAAATCTCTGGTGCAAATCCACGAAAAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100766-'19-22,'19-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(15.8=100)
A:
PF0017921=UQ_con=FE(30.7=100)
C2:
PF0017921=UQ_con=PD(18.8=82.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTGGGAGGAGGAGCTCTG
R:
CGTTCTTTTCGTGGATTTGCACC
Band lengths:
112-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]