BtaEX6014737 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007515 | UBE2Q1
Description
Bos taurus ubiquitin-conjugating enzyme E2Q family member 1 (UBE2Q1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206320]
Coordinates
chr3:16086636-16087463:+
Coord C1 exon
chr3:16086636-16086684
Coord A exon
chr3:16086963-16087058
Coord C2 exon
chr3:16087397-16087463
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTGCCCACATTGTTACTTAGGGC
3' ss Score
5.82
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTATGTTCTGGGCGGAGGTGCCATCTGCATGGAACTTCTCACCAAGCAG
Seq A exon
GGCTGGAGCAGTGCCTACTCGATAGAGTCAGTGATCATGCAGATCAGTGCCACACTGGTGAAGGGGAAAGCACGAGTGCAGTTTGGAGCCAACAAA
Seq C2 exon
TCTCAATACAGCCTGACAAGAGCACAGCAGTCCTACAAGTCCTTGGTGCAGATCCACGAAAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007515-'28-19,'28-18,29-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(15.8=100)
A:
PF0017921=UQ_con=FE(30.7=100)
C2:
PF0017921=UQ_con=PD(18.8=82.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGTTCTGGGCGGAGGTG
R:
TTTTCGTGGATCTGCACCAAGG
Band lengths:
111-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]