MmuEX6072208 @ mm10
Exon Skipping
Gene
ENSMUSG00000042572 | Ube2q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:MGI Symbol;Acc:MGI:1917343]
Coordinates
chr3:89781047-89781837:+
Coord C1 exon
chr3:89781047-89781095
Coord A exon
chr3:89781368-89781463
Coord C2 exon
chr3:89781771-89781837
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTCCCTGCCGTGCCCCAGGGC
3' ss Score
7.62
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTATGTTCTGGGTGGAGGTGCCATCTGCATGGAACTTCTCACCAAGCAG
Seq A exon
GGCTGGAGCAGTGCCTACTCCATAGAGTCCGTGATCATGCAGATCAGCGCCACGCTGGTGAAGGGGAAAGCACGGGTGCAGTTTGGAGCCAACAAA
Seq C2 exon
TCTCAGTATAGCCTGACGAGAGCACAGCAGTCCTACAAGTCCTTGGTGCAGATCCATGAAAAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042572-'17-21,'17-20,20-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(15.8=100)
A:
PF0017921=UQ_con=FE(30.7=100)
C2:
PF0017921=UQ_con=PD(18.8=82.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGTTCTGGGTGGAGGTGC
R:
TTTTCATGGATCTGCACCAAGGA
Band lengths:
111-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types