RnoEX6010346 @ rn6
Exon Skipping
Gene
ENSRNOG00000020791 | Ube2q1
Description
ubiquitin conjugating enzyme E2 Q1 [Source:RGD Symbol;Acc:1305305]
Coordinates
chr2:189113476-189114232:+
Coord C1 exon
chr2:189113476-189113524
Coord A exon
chr2:189113798-189113893
Coord C2 exon
chr2:189114166-189114232
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTCCCTGCCGTGCCCCAGGGC
3' ss Score
7.62
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTATGTTCTGGGCGGAGGTGCCATCTGCATGGAGCTGCTCACCAAGCAG
Seq A exon
GGCTGGAGCAGCGCCTACTCCATAGAGTCCGTGATCATGCAGATCAGCGCCACGCTGGTGAAGGGGAAGGCACGGGTGCAGTTCGGAGCCAACAAA
Seq C2 exon
TCTCAGTATAGTCTGACAAGAGCACAGCAGTCCTACAAGTCCTTGGTGCAGATCCACGAAAAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020791-'16-19,'16-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(15.8=100)
A:
PF0017921=UQ_con=FE(30.7=100)
C2:
PF0017921=UQ_con=PD(18.8=82.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGTTCTGGGCGGAGGTG
R:
TTTTCGTGGATCTGCACCAAGG
Band lengths:
111-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]