HsaEX0068781 @ hg19
Exon Skipping
Gene
ENSG00000160714 | UBE2Q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:HGNC Symbol;Acc:15698]
Coordinates
chr1:154523414-154524295:-
Coord C1 exon
chr1:154524247-154524295
Coord A exon
chr1:154523873-154523968
Coord C2 exon
chr1:154523414-154523480
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTCCTTCCCTTCACCCAGGGC
3' ss Score
9.21
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTATGTTCTGGGCGGAGGGGCCATCTGCATGGAACTTCTCACCAAACAG
Seq A exon
GGCTGGAGCAGTGCCTACTCCATAGAGTCAGTGATCATGCAGATCAGTGCCACACTGGTGAAGGGGAAAGCACGAGTGCAGTTTGGAGCCAACAAA
Seq C2 exon
TCTCAATACAGTCTGACAAGAGCACAGCAGTCCTACAAGTCCTTGGTGCAGATCCACGAAAAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160714_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(15.8=100)
A:
PF0017921=UQ_con=FE(30.7=100)
C2:
PF0017921=UQ_con=PD(18.8=82.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGTTCTGGGCGGAGGGG
R:
TTTTCGTGGATCTGCACCAAGG
Band lengths:
111-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)