DreEX6067088 @ danRer10
Exon Skipping
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:190060-191975:-
Coord C1 exon
chr12:191742-191975
Coord A exon
chr12:191195-191362
Coord C2 exon
chr12:190060-190176
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTCACCTGCTCTAGACG
3' ss Score
7.31
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GCCCGGAGTTTCCTGAACCCGGATGACATCCTGAAAGGTGATGTTCTGGAGAGTCTGCTGCGTGTTCAGGCCGCTGTAGACCTGCTGACACACTTCAAGAACACATATGAGGACAGAAGAGCCAACCTGAGCCACTACCAGAAGAACGAAGACCCAGTCAAGCCCTGGGATTTCTCTCCCCTCATGGTGTTCGTCGGCCTGGATCACTTCATGAAGAGACTCAGAACTATTGAG
Seq A exon
ACGGTGCTGCTCACTGTCATGGATATGATGAGGCTGGAGAAGATCGAGTTTGGAGGCATTCAGGGGAAATCTCTCAGCCAGATTGTCCAGCGTTTGCATGAAGACTTCCTGCAGACGTACAAATCCTTCTCAGAGAAGCCCTACGACTGCCTGGATGTTAATAATATG
Seq C2 exon
GAGTTTGAATCAGATTTCGCAGAGTTCCAGCTGACTGTGGATGATACGAACAGGCGATTGGGAGCCATCTTCTGCAACGCTTTTGATGACGCTTCAGGTCTGGAACACTCCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(18.1=100)
A:
PF083857=DHC_N1=FE(12.9=100)
C2:
PF083857=DHC_N1=FE(8.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTAGACCTGCTGACACAC
R:
AAGCGTCATCAAAAGCGTTGC
Band lengths:
256-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]