RnoEX0028672 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52666982-52686190:-
Coord C1 exon
chr10:52685957-52686190
Coord A exon
chr10:52673822-52673989
Coord C2 exon
chr10:52666982-52667132
Length
168 bp
Sequences
Splice sites
3' ss Seq
TCTGTGAAATATCCCGATAGGAT
3' ss Score
7.1
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
GCCTCTAATTACCTCAGCCCGGAAGACCTCCTGAGAAGTGAGGTGGAAGAGAGTCAGAGAAAACTGCAAATAGTCTCAGATACCTTAAGCTTCTTCAAACAGGCATTTCAGGACAGAAGGGAACATCTCCATACTTACTTCAAGGAGGACTCTGAAGTCAGGGCATGGGATTTCCAAGCATCTCTGGTCTTTGTACGACTGGATGGCTTTCTGGGCCGACTACGCATGGTGGAG
Seq A exon
GATCTTCTGAAGACAGCCTTGGATTTCAACAAGCTGGAAAAGCTTGAATTCAGTGGCCTCAGAGGAAACTCACTGAGTCAGAAAGTTCAGCAAATGCATGAGGAATTTGAAGAGATGTACAAGGTCTTCCTGGACTGTTCCTATGACTGTTTGAACCCCGAGAGCATG
Seq C2 exon
CTCCTAGATATCACAGGGACCCTTGTCGAAAGACCCCTGGTAGCACAGGATGTGTCACACAAATACCTGGCCCTCATCCGAATGTTCAACACAGAACTGGATGCCGTGAGGATCATCTACAGTCAGCACATCCGGGAAGAGGTGGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171_MULTIEX4-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(13.2=100)
A:
PF083857=DHC_N1=FE(9.5=100)
C2:
PF083857=DHC_N1=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAAGACCTCCTGAGAAGT
R:
TCTTTCGACAAGGGTCCCTGT
Band lengths:
249-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]