HsaEX6021169 @ hg19
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11522865-11536020:+
Coord C1 exon
chr17:11522865-11523098
Coord A exon
chr17:11532734-11532901
Coord C2 exon
chr17:11535904-11536020
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTGTGAATTGTCCCCATAGGGT
3' ss Score
10.35
5' ss Seq
ACGGTAGGG
5' ss Score
7.68
Exon sequences
Seq C1 exon
GCCTCTAATTATCTCAGCCCAGAAGACCTGCTGAGAAGTGAGGTAGAAGAAAGTCAGAGAAAACTGCAAGTGGTCTCAGACACTTTGAGCTTCTTCAAGCAAGAGTTTCAGGACAGAAGGGAGAATCTCCACACTTACTTCAAAGAGAACCAGGAAGTCAAGGAATGGGATTTCCAGTCTTCTTTGGTCTTTGTGCGATTGGATGGCTTCCTGGGACAACTGCACGTGGTGGAG
Seq A exon
GGTCTTCTGAAGACGGCCCTGGATTTCCACAAACTGGGAAAGGTGGAGTTCAGCGGCGTCAGAGGGAATGCTCTGAGTCAGCAGGTCCAGCAAATGCATGAAGAATTTCAAGAGATGTACAGGCTTCTCTCAGGATCCTCCTCCGACTGCCTGTACCTCCAAAGCACG
Seq C2 exon
GACTTTGAAAATGACGTCTCTGAATTTAACCAGAAAGTAGAAGATCTTGACCGAAGATTGGGGACTATCTTTATTCAAGCTTTTGATGATGCACCTGGCTTGGAGCATGCCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'5-6,'5-5,6-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(13.2=100)
A:
PF083857=DHC_N1=FE(9.5=100)
C2:
PF083857=DHC_N1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGAGTTTCAGGACAGAAGG
R:
CTCCAAGCCAGGTGCATCATC
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)