GgaEX6015796 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GG21]
Coordinates
chr18:1038025-1042406:+
Coord C1 exon
chr18:1038025-1038258
Coord A exon
chr18:1040353-1040520
Coord C2 exon
chr18:1042290-1042406
Length
168 bp
Sequences
Splice sites
3' ss Seq
CATCTCCTCTCACTTTGAAGGAT
3' ss Score
9.77
5' ss Seq
GCGGTAGGT
5' ss Score
9
Exon sequences
Seq C1 exon
GCCCTGGTATACCTATCTCCAGAAGACCTTCTAAAAGGGGAGACGGAAGAGAGTATGGGCAAGGTGCAGATGGTGCTCAGCGTCCTGAATGGATTCAAAGAGACATTTGAGGACAGAAGGGAAGAACTTCACACCTACTATAAACCAGACCAAGAAGTGAAGGAGTGGGATTTCCATGCCACGATGGTGTTTGCAAGGCTGGACAGCTTTCTGAAGAGACTGGAGATGGTGGAG
Seq A exon
GATCTCCTGGCAAACGCCTTGGATCTGATGAAGCTGGAGAAGATTGAGTTCAGTGGATTTAAAGGGAAGGCCCTGAGTCAGCAGGTCCTGGACATGCATGAGGAATTCCAGGAGGCATACAAGGTCTTTGCAGAGCGAACCTATGACTGCCTCGACCTGACCAATGCG
Seq C2 exon
GATTTTGAGCAAGATGCCTTTGATTTCCAGCAGAAAGTAGAAGACATTGACCGGCGCCTGGGGACTGTTTTCATCCAGGCCTTTGATGATGCCTCGGACTTGGATCACACCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026090-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(24.1=100)
A:
PF083857=DHC_N1=FE(17.2=100)
C2:
PF083857=DHC_N1=FE(11.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGCGTCCTGAATGGATT
R:
GGCATCATCAAAGGCCTGGAT
Band lengths:
253-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]