DreEX6067089 @ danRer10
Exon Skipping
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:188526-190176:-
Coord C1 exon
chr12:190060-190176
Coord A exon
chr12:188721-188871
Coord C2 exon
chr12:188526-188640
Length
151 bp
Sequences
Splice sites
3' ss Seq
ACCCAATCTCTGCTTGGCAGGTT
3' ss Score
7.13
5' ss Seq
GAGGTCTGC
5' ss Score
3.9
Exon sequences
Seq C1 exon
GAGTTTGAATCAGATTTCGCAGAGTTCCAGCTGACTGTGGATGATACGAACAGGCGATTGGGAGCCATCTTCTGCAACGCTTTTGATGACGCTTCAGGTCTGGAACACTCCTTCAAG
Seq A exon
GTTTTGGACATGTTTGGCAGACTGCTGGAGCAGCCGCTGATAGCAGCCGAGGCTCAGGCCAGATATCCCATCCTGATCAAACTGTTTGACAAGCAGCTGGAAGACTGTAAGACGATTTTCAAGAAGCAGATGCAGATGGAGGAAACCCGAG
Seq C2 exon
GTTATTCTCCTGTCTCTAAGAACATGCCTGCGGTTTCTGGAGGACTGAAGTTTGTCCAGGAATTGCAGGAACGCATACAGACTCTTTACAATAACTTCAGATTCATCAACCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.051
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(8.9=100)
A:
PF083857=DHC_N1=FE(11.8=100)
C2:
PF083857=DHC_N1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATCAGATTTCGCAGAGTTCCA
R:
GGGTGGTTGATGAATCTGAAGT
Band lengths:
227-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]